MolNFT v1 · #154788 · protein
Crystal structure of a streptococcal protein G B1 mutant
6KMC · Immunoglobulin G-binding protein G B1: “Crystal structure of a streptococcal protein G B1 mutant”. X-ray diffraction, 1 pocket (best druggability 0.37). MolNFT v1 #154788 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KMC
- Type
- protein
- Length
- 114 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Immunoglobulin G-binding protein G B1
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Immunoglobulin G-binding protein G B1 | protein | 57 | 30% helix, 46% strand | — |
Ligands and binding sites
- ACY · Acetic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.37 | 0.78 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 376 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6KMC · Crystal structure of a Streptococcal protein G B1 mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6KMC · PDBe 6KMC
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