MolNFT v1 · #154493 · protein

Crystal structure of citrate complex of alpha-glucuronidase (TM0752) from thermotoga maritima

6KCX · Alpha-glucosidase, putative: “Crystal structure of citrate complex of alpha-glucuronidase (TM0752) from thermotoga maritima”. X-ray diffraction, 1 ligand (CO), 2 pockets (best druggability 0.77). MolNFT v1 #154493 on GenesisL1: 3D…

PDB: 6KCX
Type: protein
Length: 470 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha-glucosidase, putative
UniProt: Q9WZL1
Ligands: CO
Pockets: 2 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alpha-glucosidase, putative	protein	470	47% helix, 16% strand	Q9WZL1

Ligands and binding sites

CO · Cobalt (II) ion · metal · chains A
CIT · Citric acid · additive · 2 copies · chains A
IMD · Imidazole · additive · chains A
IPA · Isopropyl alcohol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1062	0.77	0.79	84	CO, IMD, CIT
2	56	0.29	0.74	14	empty

Compared structures

6KCX · Crystal structure of citrate complex of alpha-glucuronidase (TM0752)from Thermotoga… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WZL1
Elsewhere: RCSB PDB 6KCX · PDBe 6KCX · UniProt Q9WZL1

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