MolNFT v1 · #154457 · protein

Three-dimensional lps bound structure of VG16KRKP-KYE28.

6KBO: “Three-dimensional lps bound structure of VG16KRKP-KYE28.”. Solution nmr. MolNFT v1 #154457 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KBO
Type: protein
Length: 44 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: VG16KRKP; Heparin cofactor 2
UniProt: P05546

Structure

solution nmr · 2 distinct chains · 18% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	VG16KRKP	protein	16	0% helix, 0% strand	—
B	Heparin cofactor 2	protein	28	29% helix, 0% strand	P05546

Interfaces

1 interface between chains.

A–B · 442 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

6KBO · Three-dimensional LPS bound structure of VG16KRKP-KYE28. · the same entry in another collection · chain A against A, TM-score 1.00
P05546 · AlphaFold monomer V2.0 prediction for heparin cofactor 2 (P05546) · a predicted model of the same protein · chain B against A, TM-score 0.33

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P05546
Elsewhere: RCSB PDB 6KBO · PDBe 6KBO · UniProt P05546

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