MolNFT v1 · #154369 · protein
Pyridoxal kinase from leishmania donovani in complex with ADP and ginkgotoxin
6K92: “Pyridoxal kinase from leishmania donovani in complex with ADP and ginkgotoxin”. X-ray diffraction, 5 ligands (ADP, GT0, CA). MolNFT v1 #154369 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K92
- Type
- protein
- Length
- 584 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E9BLM4
- Ligands
- ADP, GT0, CA, PO4, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 290 | — | E9BLM4 |
| B | — | protein | 294 | — | E9BLM4 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
- GT0 · 5-(hydroxymethyl)-4-(methoxymethyl)-2-methylpyridin-3-ol · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 7 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K92 · Pyridoxal Kinase from Leishmania donovani in complex with ADP and Ginkgotoxin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E9BLM4
- Elsewhere: RCSB PDB 6K92 · PDBe 6K92 · UniProt E9BLM4
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