MolNFT v1 · #154341 · protein

The closed state of RGLG1 mutant-E378A

6K86 · E3 ubiquitin-protein ligase RGLG1: “The closed state of RGLG1 mutant-E378A”. X-ray diffraction, 2 ligands (MG, NA), 2 pockets (best druggability 0.51). MolNFT v1 #154341 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6K86
Type: protein
Length: 281 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: E3 ubiquitin-protein ligase RGLG1
EC: 2.3.2.27
UniProt: Q9SS90
Ligands: MG, NA
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	E3 ubiquitin-protein ligase RGLG1 (EC 2.3.2.27)	protein	281	41% helix, 15% strand	Q9SS90

Ligands and binding sites

MG · Magnesium ion · metal · chains B
NA · Sodium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	189	0.51	0.77	37	empty
2	57	0.27	0.73	14	empty

Compared structures

6K86 · The closed state of RGLG1 mutant-E378A · the same entry in another collection · chain B against B, TM-score 1.00
Q9SS90 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase RGLG1 (Q9SS90) · a predicted model of the same protein · chain B against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9SS90
Elsewhere: RCSB PDB 6K86 · PDBe 6K86 · UniProt Q9SS90

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