MolNFT v1 · #154238 · protein + DNA + RNA
Crystal structure of XCAS9 in complex with sgrna and DNA (tgg pam)
6K4P: “Crystal structure of XCAS9 in complex with sgrna and DNA (tgg pam)”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #154238 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K4P
- Type
- protein + DNA + RNA
- Length
- 1,443 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q99ZW2
- Ligands
- PO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 81 | — | — |
| C | — | dna | 28 | — | — |
| D | — | dna | 11 | — | — |
| B | — | protein | 1323 | — | Q99ZW2 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 5 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K4P · Crystal structure of xCas9 in complex with sgRNA and DNA (TGG PAM) · the same entry in another collection · chain A against A, TM-score 1.00
- Q99ZW2 · AlphaFold monomer V2.0 prediction for CRISPR-associated endonuclease CAS9/CSN1 (Q99ZW2) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99ZW2
- Elsewhere: RCSB PDB 6K4P · PDBe 6K4P · UniProt Q99ZW2
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