MolNFT v1 · #154189 · protein
Crystal structure of THR66 ADP-ribosylated ubiquitin
6K2U · Polyubiquitin-C: “Crystal structure of THR66 ADP-ribosylated ubiquitin”. X-ray diffraction, 3 ligands (AR6, MG, ZN). MolNFT v1 #154189 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K2U
- Type
- protein
- Length
- 73 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyubiquitin-C
- UniProt
- P0CG48
- Ligands
- AR6, MG, ZN
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Polyubiquitin-C | protein | 73 | 25% helix, 37% strand | P0CG48 |
Ligands and binding sites
- AR6 · [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate · ligand · chains B
- MG · Magnesium ion · metal · 2 copies · chains B
- ZN · Zinc ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 6K2U · Crystal structure of Thr66 ADP-ribosylated ubiquitin · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CG48
- Elsewhere: RCSB PDB 6K2U · PDBe 6K2U · UniProt P0CG48
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