MolNFT v1 · #154183 · protein
Structural basis of glycan recognition in globally predominant human P[8] rotavirus
6K2O · Outer capsid protein VP4: “Structural basis of glycan recognition in globally predominant human P[8] rotavirus”. X-ray diffraction, 4 ligands (GAL, NAG, FUC). MolNFT v1 #154183 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6K2O
- Type
- protein
- Length
- 163 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer capsid protein VP4
- UniProt
- E2EA82
- Ligands
- GAL, NAG, FUC, NA
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer capsid protein VP4 | protein | 163 | 8% helix, 56% strand | E2EA82 |
Ligands and binding sites
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K2O · Structural basis of glycan recognition in globally predominant human P[8] rotavirus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E2EA82
- Elsewhere: RCSB PDB 6K2O · PDBe 6K2O · UniProt E2EA82
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