MolNFT v1 · #154140 · protein
Crystal structure of EXD2 exonuclease domain soaked in mg and dgmp
6K1C: “Crystal structure of EXD2 exonuclease domain soaked in mg and dgmp”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #154140 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K1C
- Type
- protein
- Length
- 387 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NVH0
- Ligands
- MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 194 | — | Q9NVH0 |
| B | — | protein | 193 | — | Q9NVH0 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K1C · Crystal structure of EXD2 exonuclease domain soaked in Mg and dGMP · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NVH0 · AlphaFold monomer V2.0 prediction for exonuclease 3'-5' domain- containing protein 2… · a predicted model of the same protein · chain B against A, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NVH0
- Elsewhere: RCSB PDB 6K1C · PDBe 6K1C · UniProt Q9NVH0
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