MolNFT v1 · #154005 · protein

Structure of Y17107 complexed hppd

6JX9 · 4-hydroxyphenylpyruvate dioxygenase: “Structure of Y17107 complexed hppd”. X-ray diffraction, 2 ligands (CQC, CO), 2 pockets (best druggability 0.67). MolNFT v1 #154005 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JX9
Type: protein
Length: 380 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 4-hydroxyphenylpyruvate dioxygenase
EC: 1.13.11.27
UniProt: P93836
Ligands: CQC, CO
Pockets: 2 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	protein	380	27% helix, 33% strand	P93836

Ligands and binding sites

CQC · 5-[(~{Z})-(1,3-dimethyl-5-oxidanylidene-pyrazol-4-ylidene)-oxidanyl-methyl]-2-(phenylmethyl)isoindole-1, 3-dione · ligand · chains A
CO · Cobalt (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	474	0.67	0.78	45	CQC, CO
2	64	0.34	0.77	12	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6JX9 · Structure of Y17107 complexed HPPD · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P93836
Elsewhere: RCSB PDB 6JX9 · PDBe 6JX9 · UniProt P93836

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