MolNFT v1 · #153935 · protein
Crystal structure of the sirohydrochlorin chelatase sirb from bacillus subtilis subspecies spizizenii in complex with cobalt
6JV6 · Sirohydrochlorin ferrochelatase: “Crystal structure of the sirohydrochlorin chelatase sirb from bacillus subtilis subspecies spizizenii in…”. X-ray diffraction, 1 ligand (CO), 1 pocket (best druggability 0.61). MolNFT v1 #153935 on…
- PDB
- 6JV6
- Type
- protein
- Length
- 234 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sirohydrochlorin ferrochelatase
- EC
- 4.99.1.3, 4.99.1.4
- UniProt
- A0A2X0Z2A9
- Ligands
- CO
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sirohydrochlorin ferrochelatase (EC 4.99.1.3, 4.99.1.4) | protein | 234 | 48% helix, 18% strand | A0A2X0Z2A9 |
Ligands and binding sites
- CO · Cobalt (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 138 | 0.61 | 0.84 | 19 | empty |
Compared structures
- 6JV6 · Crystal structure of the sirohydrochlorin chelatase SirB from Bacillus subtilis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2X0Z2A9
- Elsewhere: RCSB PDB 6JV6 · PDBe 6JV6 · UniProt A0A2X0Z2A9
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