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Crystal structure of the sirohydrochlorin chelatase sirb from bacillus subtilis subspecies spizizenii in complex with cobalt

Analyse Crystal structure of the sirohydrochlorin chelatase sirb from bacillus subtilis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6JV6
Type: protein
Length: 234 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sirohydrochlorin ferrochelatase
EC: 4.99.1.3, 4.99.1.4
UniProt: A0A2X0Z2A9
Ligands: CO
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sirohydrochlorin ferrochelatase (EC 4.99.1.3, 4.99.1.4)	protein	234	48% helix, 18% strand	A0A2X0Z2A9

Ligands and binding sites

CO · Cobalt (II) ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	138	0.61	0.84	19	empty

Compared structures

6JV6 · Crystal structure of the sirohydrochlorin chelatase SirB from Bacillus subtilis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2X0Z2A9
Elsewhere: RCSB PDB 6JV6 · PDBe 6JV6 · UniProt A0A2X0Z2A9

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