MolNFT v1 · #153754 · protein
Crystal structure of pdgfra in complex with sunitinib by soaking
6JOK: “Crystal structure of pdgfra in complex with sunitinib by soaking”. X-ray diffraction, 2 ligands (B49, CL). MolNFT v1 #153754 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JOK
- Type
- protein
- Length
- 338 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P16234
- Ligands
- B49, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 338 | — | P16234 |
Ligands and binding sites
- B49 · N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide · ligand · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JOK · Crystal structure of PDGFRA in complex with sunitinib by soaking · the same entry in another collection · chain A against A, TM-score 1.00
- P16234 · AlphaFold monomer V2.0 prediction for platelet-derived growth factor receptor alpha… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16234
- Elsewhere: RCSB PDB 6JOK · PDBe 6JOK · UniProt P16234
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