MolNFT v1 · #153660 · protein
Crystal structure of a frog ependymin related protein
6JL9 · Ependymin-related 1: “Crystal structure of a frog ependymin related protein”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.65). MolNFT v1 #153660 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JL9
- Type
- protein
- Length
- 189 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ependymin-related 1
- UniProt
- F6VRB7
- Ligands
- CA
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ependymin-related 1 | protein | 189 | 6% helix, 44% strand | F6VRB7 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 466 | 0.65 | 0.77 | 35 | empty |
| 2 | 53 | 0.40 | 0.82 | 15 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6JL9 · Crystal structure of a frog ependymin related protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F6VRB7
- Elsewhere: RCSB PDB 6JL9 · PDBe 6JL9 · UniProt F6VRB7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.