MolNFT v1 · #153575 · protein

Crystal structure of the histidine racemase cntk in cobalt and nickel transporter system of staphylococcus aureus

6JIS · Diaminopimelate epimerase: “Crystal structure of the histidine racemase cntk in cobalt and nickel transporter system of staphylococcus…”. X-ray diffraction, 2 ligands (CS, CL), 1 pocket (best druggability 0.69). MolNFT v1 #153575 on…

PDB: 6JIS
Type: protein
Length: 263 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Diaminopimelate epimerase
UniProt: A0A389TBD7
Ligands: CS, CL
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Diaminopimelate epimerase	protein	263	24% helix, 44% strand	A0A389TBD7

Ligands and binding sites

CS · Cesium ion · metal · 7 copies · chains A
CL · Chloride ion · ion · 3 copies · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	453	0.69	0.80	54	EDO, CS

Compared structures

6JIS · Crystal structure of the histidine racemase CntK in cobalt and nickel transporter system… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A389TBD7
Elsewhere: RCSB PDB 6JIS · PDBe 6JIS · UniProt A0A389TBD7

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