Research workbench

Crystal structure of the histidine racemase cntk in cobalt and nickel transporter system of staphylococcus aureus

Analyse Crystal structure of the histidine racemase cntk in cobalt and nickel… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6JIS
Type: protein
Length: 263 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Diaminopimelate epimerase
UniProt: A0A389TBD7
Ligands: CS, CL
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Diaminopimelate epimerase	protein	263	24% helix, 44% strand	A0A389TBD7

Ligands and binding sites

CS · Cesium ion · metal · 7 copies · chains A
CL · Chloride ion · ion · 3 copies · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	453	0.69	0.80	54	EDO, CS

Compared structures

6JIS · Crystal structure of the histidine racemase CntK in cobalt and nickel transporter system… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A389TBD7
Elsewhere: RCSB PDB 6JIS · PDBe 6JIS · UniProt A0A389TBD7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.