MolNFT v1 · #153566 · protein
Crystal structure of gmp reductase C318A from trypanosoma brucei in complex with guanosine 5'-monophosphate
6JIG: “Crystal structure of gmp reductase C318A from trypanosoma brucei in complex with guanosine 5'-monophosphate”. X-ray diffraction, 2 ligands (5GP, K), 3 pockets (best druggability 0.75). MolNFT v1 #153566 on GenesisL1: 3D structure…
- PDB
- 6JIG
- Type
- protein
- Length
- 480 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gmp reductase
- EC
- 1.7.1.7
- UniProt
- Q57ZS7
- Ligands
- 5GP, K
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gmp reductase (EC 1.7.1.7) | protein | 480 | 36% helix, 21% strand | Q57ZS7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 375 | 0.75 | 0.85 | 43 | 5GP |
| 2 | 203 | 0.60 | 0.82 | 33 | 5GP |
| 3 | 52 | 0.25 | 0.73 | 13 | empty |
Compared structures
- 6JIG · Crystal structure of GMP reductase C318A from Trypanosoma brucei in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57ZS7
- Elsewhere: RCSB PDB 6JIG · PDBe 6JIG · UniProt Q57ZS7
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