MolNFT v1 · #153525 · protein

Structure of marine bacterial laminarinase

6JH5 · Lamcat: “Structure of marine bacterial laminarinase”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.51). MolNFT v1 #153525 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JH5
Type: protein
Length: 232 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lamcat
Ligands: CA
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lamcat	protein	232	9% helix, 52% strand	—

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	175	0.51	0.78	30	empty

Compared structures

6JH5 · Structure of Marine bacterial laminarinase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6JH5 · PDBe 6JH5

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