MolNFT v1 · #153417 · protein

Crystal structure of truncated prrsv NSP10 (helicase)

6JDS · PP1B: “Crystal structure of truncated prrsv NSP10 (helicase)”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best druggability 0.42). MolNFT v1 #153417 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JDS
Type: protein
Length: 259 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PP1B
UniProt: J9XNG9
Ligands: ZN
Pockets: 3 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PP1B	protein	259	22% helix, 22% strand	J9XNG9

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	97	0.42	0.78	17	empty
2	88	0.37	0.76	20	empty
3	52	0.33	0.77	13	empty

Compared structures

6JDS · Crystal structure of truncated PRRSV nsp10 (helicase) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt J9XNG9
Elsewhere: RCSB PDB 6JDS · PDBe 6JDS · UniProt J9XNG9

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