Research workbench
Crystal structure of truncated prrsv NSP10 (helicase)
Analyse Crystal structure of truncated prrsv NSP10 (helicase) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JDS
- Type
- protein
- Length
- 259 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PP1B
- UniProt
- J9XNG9
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PP1B | protein | 259 | 22% helix, 22% strand | J9XNG9 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.42 | 0.78 | 17 | empty |
| 2 | 88 | 0.37 | 0.76 | 20 | empty |
| 3 | 52 | 0.33 | 0.77 | 13 | empty |
Compared structures
- 6JDS · Crystal structure of truncated PRRSV nsp10 (helicase) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J9XNG9
- Elsewhere: RCSB PDB 6JDS · PDBe 6JDS · UniProt J9XNG9
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