MolNFT v1 · #153405 · protein
Crystal structure of the cypemycin decarboxylase cypd.
6JDD · Cypemycin cysteine dehydrogenase (decarboxylating): “Crystal structure of the cypemycin decarboxylase cypd.”. X-ray diffraction, 1 ligand (FAD). MolNFT v1 #153405 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JDD
- Type
- protein
- Length
- 176 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cypemycin cysteine dehydrogenase (decarboxylating)
- EC
- 1.3.99.36
- UniProt
- E5KIB9
- Ligands
- FAD
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cypemycin cysteine dehydrogenase (decarboxylating) (EC 1.3.99.36) | protein | 176 | 41% helix, 16% strand | E5KIB9 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JDD · Crystal structure of the cypemycin decarboxylase CypD. · the same entry in another collection · chain A against A, TM-score 1.00
- E5KIB9 · AlphaFold monomer V2.0 prediction for cypemycin cysteine dehydrogenase (decarboxylating)… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E5KIB9
- Elsewhere: RCSB PDB 6JDD · PDBe 6JDD · UniProt E5KIB9
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