MolNFT v1 · #153382 · protein

Crystal structure of calcium free human gelsolin amyloid mutant D187N

6JCO: “Crystal structure of calcium free human gelsolin amyloid mutant D187N”. X-ray diffraction, 20 pockets (best druggability 0.82). MolNFT v1 #153382 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JCO
Type: protein
Length: 1,416 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gelsolin
UniProt: P06396
Pockets: 20 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 25% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gelsolin	protein	701	24% helix, 29% strand	P06396
B	Gelsolin	protein	715	25% helix, 28% strand	P06396

Pockets

20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	923	0.82	0.84	91	empty
2	855	0.80	0.83	110	empty
3	939	0.80	0.82	102	empty
4	1066	0.77	0.79	92	empty
5	326	0.61	0.78	44	empty

Interfaces

1 interface between chains.

A–B · 681 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6JCO · Crystal structure of calcium free human gelsolin amyloid mutant D187N · the same entry in another collection · chain A against A, TM-score 1.00
P06396 · AlphaFold monomer V2.0 prediction for gelsolin (P06396) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06396
Elsewhere: RCSB PDB 6JCO · PDBe 6JCO · UniProt P06396

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