MolNFT v1 · #153347 · protein
Crystal structure of efeo-like protein ALGP7 containing samarium ion
6JBO · Alginate-binding protein: “Crystal structure of efeo-like protein ALGP7 containing samarium ion”. X-ray diffraction, 1 ligand (SM), 4 pockets (best druggability 0.85). MolNFT v1 #153347 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6JBO
- Type
- protein
- Length
- 502 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alginate-binding protein
- UniProt
- Q25C86
- Ligands
- SM
- Pockets
- 4 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alginate-binding protein | protein | 251 | 75% helix, 1% strand | Q25C86 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 898 | 0.85 | 0.87 | 102 | EDO |
| 2 | 66 | 0.49 | 0.85 | 21 | EDO |
| 3 | 56 | 0.46 | 0.85 | 19 | EDO |
| 4 | 68 | 0.45 | 0.82 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 943 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6JBO · Crystal structure of EfeO-like protein Algp7 containing samarium ion · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q25C86
- Elsewhere: RCSB PDB 6JBO · PDBe 6JBO · UniProt Q25C86
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.