MolNFT v1 · #153337 · protein
Phosphotransferase-ATP complex related to CoA biosynthesis pathway
6JBD · Pantoate kinase: “Phosphotransferase-ATP complex related to CoA biosynthesis pathway”. X-ray diffraction, 4 ligands (ATP, CA, NA), 1 pocket (best druggability 0.63). MolNFT v1 #153337 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6JBD
- Type
- protein
- Length
- 295 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pantoate kinase
- EC
- 2.7.1.169
- UniProt
- Q5JHF1
- Ligands
- ATP, CA, NA, MG
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pantoate kinase (EC 2.7.1.169) | protein | 295 | 36% helix, 31% strand | Q5JHF1 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- CA · Calcium ion · metal · 3 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 379 | 0.63 | 0.78 | 45 | GOL, ATP, MG |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5JHF1
- Elsewhere: RCSB PDB 6JBD · PDBe 6JBD · UniProt Q5JHF1
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