MolNFT v1 · #153305 · protein

Crystal structure of ABC transporter alpha-glycoside-binding protein in complex with sucrose

6JAG · ABC transporter, periplasmic substrate-binding protein: “Crystal structure of ABC transporter alpha-glycoside-binding protein in complex with sucrose”. X-ray diffraction, 2 ligands (GLC, FRU), 1 pocket (best druggability 0.79).…

PDB: 6JAG
Type: protein
Length: 404 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC transporter, periplasmic substrate-binding protein
UniProt: Q5SLD7
Ligands: GLC, FRU
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ABC transporter, periplasmic substrate-binding protein	protein	404	49% helix, 16% strand	Q5SLD7

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · chains A
FRU · beta-D-fructofuranose · sugar · chains A
CIT · Citric acid · additive · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	151	0.79	0.95	33	GLC, FRU

Compared structures

6JAG · Crystal structure of ABC transporter alpha-glycoside-binding protein in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SLD7
Elsewhere: RCSB PDB 6JAG · PDBe 6JAG · UniProt Q5SLD7

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