MolNFT v1 · #153202 · protein
Apo-state streptavidin
6J6K: “Apo-state streptavidin”. Electron microscopy, 4 pockets (best druggability 0.62). MolNFT v1 #153202 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6J6K
- Type
- protein
- Length
- 476 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Streptavidin
- UniProt
- P22629
- Pockets
- 4 · best druggability 0.62
Structure
electron microscopy · 1 distinct chain · 0% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Streptavidin | protein | 119 | 0% helix, 54% strand | P22629 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 237 | 0.62 | 0.81 | 39 | empty |
| 2 | 262 | 0.62 | 0.81 | 43 | empty |
| 3 | 250 | 0.62 | 0.81 | 38 | empty |
| 4 | 258 | 0.60 | 0.80 | 36 | empty |
Interfaces
6 interfaces between chains.
- A–C · 1519 Ų buried · 16 hydrogen bonds · protein-protein
- B–D · 1514 Ų buried · 16 hydrogen bonds · protein-protein
- B–C · 422 Ų buried · 2 hydrogen bonds · protein-protein
- A–D · 421 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 190 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6J6K · Apo-state streptavidin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22629
- Elsewhere: RCSB PDB 6J6K · PDBe 6J6K · UniProt P22629
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