MolNFT v1 · #152666 · protein
Non-native human ferritin 8-mer
6IPC · Ferritin heavy chain: “Non-native human ferritin 8-mer”. X-ray diffraction, 20 pockets (best druggability 0.80). MolNFT v1 #152666 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6IPC
- Type
- protein
- Length
- 2,440 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin heavy chain
- EC
- 1.16.3.1
- UniProt
- P02794
- Pockets
- 20 · best druggability 0.80
Structure
x-ray diffraction · 3 distinct chains · 66% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G, I, K, M, O | Ferritin heavy chain (EC 1.16.3.1) | protein | 162 | 69% helix, 1% strand | P02794 |
| B, F, H, J, N, P | Ferritin heavy chain (EC 1.16.3.1) | protein | 143 | 66% helix, 1% strand | P02794 |
| D, L | Ferritin heavy chain (EC 1.16.3.1) | protein | 143 | 64% helix, 1% strand | P02794 |
Ligands and binding sites
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A, C, K, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.80 | 0.99 | 20 | empty |
| 2 | 76 | 0.77 | 0.99 | 16 | empty |
| 3 | 79 | 0.77 | 0.99 | 14 | empty |
| 4 | 82 | 0.77 | 0.98 | 17 | empty |
| 5 | 84 | 0.77 | 0.98 | 19 | empty |
Interfaces
29 interfaces between chains.
- M–N · 1614 Ų buried · 26 hydrogen bonds · protein-protein
- I–J · 1580 Ų buried · 29 hydrogen bonds · protein-protein
- A–B · 1562 Ų buried · 32 hydrogen bonds · protein-protein
- K–L · 1557 Ų buried · 22 hydrogen bonds · protein-protein
- C–D · 1523 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 6IPC · Non-native human ferritin 8-mer · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02794
- Elsewhere: RCSB PDB 6IPC · PDBe 6IPC · UniProt P02794
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