MolNFT v1 · #152469 · protein
USP14 catalytic domain with IU1-206
6IIM · Ubiquitin carboxyl-terminal hydrolase 14: “USP14 catalytic domain with IU1-206”. X-ray diffraction, 1 ligand (A8L), 6 pockets (best druggability 0.54). MolNFT v1 #152469 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6IIM
- Type
- protein
- Length
- 669 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin carboxyl-terminal hydrolase 14
- EC
- 3.4.19.12
- UniProt
- P54578
- Ligands
- A8L
- Pockets
- 6 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.4.19.12) | protein | 338 | 32% helix, 30% strand | P54578 |
| B | Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.4.19.12) | protein | 331 | 32% helix, 28% strand | P54578 |
Ligands and binding sites
- A8L · 1-[1-(4-chlorophenyl)-2,5-dimethyl-1H-pyrrol-3-yl]-2-(4-hydroxypiperidin-1-yl)ethan-1-one · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.54 | 0.86 | 16 | A8L |
| 2 | 73 | 0.48 | 0.83 | 16 | A8L |
| 3 | 175 | 0.46 | 0.76 | 29 | empty |
| 4 | 177 | 0.45 | 0.74 | 22 | empty |
| 5 | 142 | 0.43 | 0.76 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 779 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54578
- Elsewhere: RCSB PDB 6IIM · PDBe 6IIM · UniProt P54578
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.