MolNFT v1 · #152382 · protein
Ksga from bacillus subtilis in complex with SAM
6IFT · Ribosomal RNA small subunit methyltransferase a: “Ksga from bacillus subtilis in complex with SAM”. X-ray diffraction, 1 ligand (SAM), 3 pockets (best druggability 0.73). MolNFT v1 #152382 on GenesisL1: 3D structure, binding sites…
- PDB
- 6IFT
- Type
- protein
- Length
- 292 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal RNA small subunit methyltransferase a
- EC
- 2.1.1.182
- UniProt
- P37468
- Ligands
- SAM
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase a (EC 2.1.1.182) | protein | 292 | 45% helix, 18% strand | P37468 |
Ligands and binding sites
- SAM · S-adenosylmethionine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.73 | 0.94 | 33 | SAM |
| 2 | 58 | 0.32 | 0.76 | 15 | empty |
| 3 | 54 | 0.29 | 0.74 | 11 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37468
- Elsewhere: RCSB PDB 6IFT · PDBe 6IFT · UniProt P37468
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