MolNFT v1 · #152313 · protein
Crystal structure of vibrio cholerae mate transporter vcmn in the bent form
6IDR · Mate family efflux transporter: “Crystal structure of vibrio cholerae mate transporter vcmn in the bent form”. X-ray diffraction, 3 pockets (best druggability 0.80). MolNFT v1 #152313 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6IDR
- Type
- protein
- Length
- 438 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mate family efflux transporter
- UniProt
- A0A2A1YWE9
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 87% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mate family efflux transporter | protein | 438 | 87% helix, 0% strand | A0A2A1YWE9 |
Ligands and binding sites
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1167 | 0.80 | 0.81 | 83 | OLC |
| 2 | 93 | 0.36 | 0.75 | 20 | empty |
| 3 | 63 | 0.31 | 0.74 | 14 | empty |
Compared structures
- 6IDR · Crystal structure of Vibrio cholerae MATE transporter VcmN in the bent form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2A1YWE9
- Elsewhere: RCSB PDB 6IDR · PDBe 6IDR · UniProt A0A2A1YWE9
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