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Crystal structure of vibrio cholerae mate transporter vcmn in the bent form

Analyse Crystal structure of vibrio cholerae mate transporter vcmn in the bent form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6IDR
Type: protein
Length: 438 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mate family efflux transporter
UniProt: A0A2A1YWE9
Pockets: 3 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 87% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mate family efflux transporter	protein	438	87% helix, 0% strand	A0A2A1YWE9

Ligands and binding sites

OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1167	0.80	0.81	83	OLC
2	93	0.36	0.75	20	empty
3	63	0.31	0.74	14	empty

Compared structures

6IDR · Crystal structure of Vibrio cholerae MATE transporter VcmN in the bent form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2A1YWE9
Elsewhere: RCSB PDB 6IDR · PDBe 6IDR · UniProt A0A2A1YWE9

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