MolNFT v1 · #15230 · protein

Nf-kappab P65 subunit dimerization domain homodimer

1MY5 · Nf-kappab P65 (rela) subunit: “Nf-kappab P65 subunit dimerization domain homodimer”. X-ray diffraction. MolNFT v1 #15230 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1MY5
Type: protein
Length: 208 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nf-kappab P65 (rela) subunit
UniProt: Q04207

Structure

x-ray diffraction · 2 distinct chains · 3% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nf-kappab P65 (rela) subunit	protein	107	3% helix, 44% strand	Q04207
B	Nf-kappab P65 (rela) subunit	protein	101	3% helix, 47% strand	Q04207

Interfaces

1 interface between chains.

A–B · 690 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

1MY5 · NF-kappaB p65 subunit dimerization domain homodimer · the same entry in another collection · chain A against A, TM-score 1.00
Q04207 · AlphaFold monomer V2.0 prediction for transcription factor P65 (Q04207) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04207
Elsewhere: RCSB PDB 1MY5 · PDBe 1MY5 · UniProt Q04207

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