MolNFT v1 · #152190 · protein

Urate oxidase under 220 bar (22 mpa) of argon

6IA3 · Uricase: “Urate oxidase under 220 bar (22 mpa) of argon”. X-ray diffraction, 5 ligands (ACE, AZA, NA), 2 pockets (best druggability 0.57). MolNFT v1 #152190 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6IA3
Type: protein
Length: 295 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uricase
EC: 1.7.3.3
UniProt: Q00511
Ligands: ACE, AZA, NA, AR, PO4
Pockets: 2 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uricase (EC 1.7.3.3)	protein	295	27% helix, 39% strand	Q00511

Ligands and binding sites

ACE · Acetyl group · ligand · chains A
AZA · 8-azaxanthine · ligand · chains A
NA · Sodium ion · metal · chains A
AR · Argon · ion · 2 copies · chains A
PO4 · Phosphate ion · ion · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	227	0.57	0.79	24	AR
2	195	0.50	0.76	23	AZA

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

6IA3 · urate oxidase under 220 bar (22 MPa) of argon · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q00511
Elsewhere: RCSB PDB 6IA3 · PDBe 6IA3 · UniProt Q00511

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