MolNFT v1 · #152185 · protein
The 2.14 a X-ray crystal structure of sporosarcina pasteurii urease in complex with AU(I) ions
6I9Y: “The 2.14 a X-ray crystal structure of sporosarcina pasteurii urease in complex with AU(I) ions”. X-ray diffraction, 4 ligands (AU, NI, SO4). MolNFT v1 #152185 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6I9Y
- Type
- protein
- Length
- 792 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0H3YGY5, P41021, A0A0H3YL32
- Ligands
- AU, NI, SO4, OH
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 100 | — | A0A0H3YGY5 |
| B | — | protein | 122 | — | P41021 |
| C | — | protein | 570 | — | A0A0H3YL32 |
Ligands and binding sites
- AU · Gold ion · metal · 3 copies · chains C
- NI · Nickel (II) ion · metal · 2 copies · chains C
- SO4 · Sulfate ion · ion · 7 copies · chains A, C, B
- OH · Hydroxide ion · ion · chains C
- EDO · 1,2-ethanediol · additive · 11 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6I9Y · The 2.14 A X-ray crystal structure of Sporosarcina pasteurii urease in complex with Au(I)… · the same entry in another collection · chain A against A, TM-score 1.00
- P41021 · AlphaFold monomer V2.0 prediction for urease subunit beta (P41021) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3YGY5
- Every structure of UniProt P41021
- Every structure of UniProt A0A0H3YL32
- Elsewhere: RCSB PDB 6I9Y · PDBe 6I9Y · UniProt A0A0H3YGY5 · UniProt P41021 · UniProt A0A0H3YL32
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