MolNFT v1 · #152121 · protein
Crystal structure of partially phosphorylated ret V804M tyrosine kinase domain complexed with PDD00018412
6I82: “Crystal structure of partially phosphorylated ret V804M tyrosine kinase domain complexed with PDD00018412”. X-ray diffraction, 2 ligands (H6W, CL). MolNFT v1 #152121 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6I82
- Type
- protein
- Length
- 567 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07949
- Ligands
- H6W, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 281 | — | P07949 |
| B | — | protein | 286 | — | P07949 |
Ligands and binding sites
- H6W · ~{N}-[3-(1,3-benzodioxol-5-yl)pyrazolo[1,5-a]pyrimidin-5-yl]-~{N}',~{N}'-dimethyl-propane-1,3-diamine · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · chains B
- FMT · Formic acid · additive · 15 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6I82 · Crystal structure of partially phosphorylated RET V804M tyrosine kinase domain complexed… · the same entry in another collection · chain A against A, TM-score 1.00
- P07949 · AlphaFold monomer V2.0 prediction for proto-oncogene tyrosine-protein kinase receptor ret… · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07949
- Elsewhere: RCSB PDB 6I82 · PDBe 6I82 · UniProt P07949
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