MolNFT v1 · #152062 · protein

Crystal structure of the kdel receptor in the peptide free state.

6I6B · Er lumen protein-retaining receptor 2: “Crystal structure of the kdel receptor in the peptide free state.”. X-ray diffraction, 1 pocket (best druggability 0.71). MolNFT v1 #152062 on GenesisL1: 3D structure, binding sites and…

PDB: 6I6B
Type: protein
Length: 203 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Er lumen protein-retaining receptor 2
UniProt: Q5ZKX9
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Er lumen protein-retaining receptor 2	protein	203	76% helix, 0% strand	Q5ZKX9

Ligands and binding sites

OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	313	0.71	0.84	34	empty

Compared structures

6I6B · Crystal structure of the KDEL receptor in the peptide free state. · the same entry in another collection · chain A against A, TM-score 1.00
Q5ZKX9 · AlphaFold monomer V2.0 prediction for er lumen protein-retaining receptor 2 (Q5ZKX9) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5ZKX9
Elsewhere: RCSB PDB 6I6B · PDBe 6I6B · UniProt Q5ZKX9

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