MolNFT v1 · #152057 · protein

Crystal structure of human errg lbd in complex with 4-iso-propylphenol

6I65 · Estrogen-related receptor gamma: “Crystal structure of human errg lbd in complex with 4-iso-propylphenol”. X-ray diffraction, 1 ligand (H3Z), 3 pockets (best druggability 0.77). MolNFT v1 #152057 on GenesisL1: 3D structure, binding…

PDB: 6I65
Type: protein
Length: 224 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Estrogen-related receptor gamma
UniProt: P62508
Ligands: H3Z
Pockets: 3 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Estrogen-related receptor gamma	protein	224	67% helix, 3% strand	P62508

Ligands and binding sites

H3Z · 4-propan-2-ylphenol · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.77	0.98	18	H3Z
2	139	0.63	0.86	23	empty
3	103	0.38	0.76	19	empty

Compared structures

6I65 · Crystal structure of human ERRg LBD in complex with 4-iso-propylphenol · the same entry in another collection · chain A against A, TM-score 1.00
P62508 · AlphaFold monomer V2.0 prediction for estrogen-related receptor gamma (P62508) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P62508
Elsewhere: RCSB PDB 6I65 · PDBe 6I65 · UniProt P62508

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