MolNFT v1 · #152043 · protein
BLMNBP1 binding protein of an ABC transporter from bifidobacterium animalis subsp. lactis ATCC27673 in complex with mannobiose
6I5R · Sugar ABC transporter substrate-binding protein, BLMNBP1: “BLMNBP1 binding protein of an ABC transporter from bifidobacterium animalis subsp. lactis ATCC27673 in…”. X-ray diffraction, 2 ligands (BMA, ZN), 2 pockets (best…
- PDB
- 6I5R
- Type
- protein
- Length
- 428 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sugar ABC transporter substrate-binding protein, BLMNBP1
- Ligands
- BMA, ZN
- Pockets
- 2 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sugar ABC transporter substrate-binding protein, BLMNBP1 | protein | 428 | 41% helix, 16% strand | — |
Ligands and binding sites
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains A
- ZN · Zinc ion · metal · 14 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 806 | 0.82 | 0.85 | 90 | BMA |
| 2 | 94 | 0.38 | 0.76 | 30 | empty |
Compared structures
- 6I5R · BlMnBP1 binding protein of an ABC transporter from Bifidobacterium animalis subsp. lactis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6I5R · PDBe 6I5R
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