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BLMNBP1 binding protein of an ABC transporter from bifidobacterium animalis subsp. lactis ATCC27673 in complex with mannobiose

Analyse BLMNBP1 binding protein of an ABC transporter from bifidobacterium animalis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6I5R
Type: protein
Length: 428 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sugar ABC transporter substrate-binding protein, BLMNBP1
Ligands: BMA, ZN
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sugar ABC transporter substrate-binding protein, BLMNBP1	protein	428	41% helix, 16% strand	—

Ligands and binding sites

BMA · beta-D-mannopyranose · sugar · 2 copies · chains A
ZN · Zinc ion · metal · 14 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	806	0.82	0.85	90	BMA
2	94	0.38	0.76	30	empty

Compared structures

6I5R · BlMnBP1 binding protein of an ABC transporter from Bifidobacterium animalis subsp. lactis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6I5R · PDBe 6I5R

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