MolNFT v1 · #151987 · protein
Crystal structure of murine neuroglobin bound to co at 15K under illumination using optical fiber
6I40: “Crystal structure of murine neuroglobin bound to co at 15K under illumination using optical fiber”. X-ray diffraction, 2 ligands (HEM, CMO), 1 pocket (best druggability 0.76). MolNFT v1 #151987 on GenesisL1: 3D structure, binding…
- PDB
- 6I40
- Type
- protein
- Length
- 148 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Neuroglobin
- UniProt
- Q9ER97
- Ligands
- HEM, CMO
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Neuroglobin | protein | 148 | 79% helix, 1% strand | Q9ER97 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- CMO · Carbon monoxide · ion · chains A
- ACT · Acetate ion · additive · 4 copies · chains A
- FMT · Formic acid · additive · 3 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.76 | 0.86 | 32 | HEM, CMO |
Compared structures
- 6I40 · Crystal structure of murine neuroglobin bound to CO at 15K under illumination using… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9ER97 · AlphaFold monomer V2.0 prediction for neuroglobin (Q9ER97) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ER97
- Elsewhere: RCSB PDB 6I40 · PDBe 6I40 · UniProt Q9ER97
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