Research workbench
Crystal structure of murine neuroglobin bound to co at 15K under illumination using optical fiber
Analyse Crystal structure of murine neuroglobin bound to co at 15K under illumination… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6I40
- Type
- protein
- Length
- 148 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Neuroglobin
- UniProt
- Q9ER97
- Ligands
- HEM, CMO
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Neuroglobin | protein | 148 | 79% helix, 1% strand | Q9ER97 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- CMO · Carbon monoxide · ion · chains A
- ACT · Acetate ion · additive · 4 copies · chains A
- FMT · Formic acid · additive · 3 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.76 | 0.86 | 32 | HEM, CMO |
Compared structures
- 6I40 · Crystal structure of murine neuroglobin bound to CO at 15K under illumination using… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9ER97 · AlphaFold monomer V2.0 prediction for neuroglobin (Q9ER97) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ER97
- Elsewhere: RCSB PDB 6I40 · PDBe 6I40 · UniProt Q9ER97
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