MolNFT v1 · #151890 · protein
Crystal structure of fascin in complex with compound 11
6I15: “Crystal structure of fascin in complex with compound 11”. X-ray diffraction, 1 ligand (GZT), 5 pockets (best druggability 0.67). MolNFT v1 #151890 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6I15
- Type
- protein
- Length
- 484 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fascin
- UniProt
- Q16658
- Ligands
- GZT
- Pockets
- 5 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fascin | protein | 484 | 6% helix, 48% strand | Q16658 |
Ligands and binding sites
- GZT · 1-[[2,2-bis(fluoranyl)-1,3-benzodioxol-5-yl]methyl]-~{N}-methyl-2-oxidanylidene-pyridine-3-carboxamide · ligand · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 275 | 0.67 | 0.83 | 46 | ACT, GZT |
| 2 | 282 | 0.56 | 0.77 | 41 | empty |
| 3 | 55 | 0.54 | 0.89 | 19 | empty |
| 4 | 106 | 0.36 | 0.74 | 20 | empty |
| 5 | 69 | 0.35 | 0.77 | 15 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16658
- Elsewhere: RCSB PDB 6I15 · PDBe 6I15 · UniProt Q16658
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