MolNFT v1 · #151863 · protein
Crystal structure of rlpa spor domain from pseudomonas aeruginosa in complex with nuded glycan obtained by co-crystallization
6I0A · Endolytic peptidoglycan transglycosylase rlpa: “Crystal structure of rlpa spor domain from pseudomonas aeruginosa in complex with nuded glycan obtained by…”. X-ray diffraction, 3 ligands (AMV, AMU, NAG). MolNFT v1 #151863 on…
- PDB
- 6I0A
- Type
- protein
- Length
- 77 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endolytic peptidoglycan transglycosylase rlpa
- EC
- 4.2.2.-
- UniProt
- A0A0A8RDC6
- Ligands
- AMV, AMU, NAG
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endolytic peptidoglycan transglycosylase rlpa (EC 4.2.2.-) | protein | 77 | 32% helix, 39% strand | A0A0A8RDC6 |
Ligands and binding sites
- AMV · methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside · ligand · chains A
- AMU · N-acetyl-beta-muramic acid · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6I0A · Crystal structure of RlpA SPOR domain from Pseudomonas aeruginosa in complex with nuded… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A8RDC6
- Elsewhere: RCSB PDB 6I0A · PDBe 6I0A · UniProt A0A0A8RDC6
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