MolNFT v1 · #151744 · protein
Crystal structure of P38ALPHA in complex with a photoswitchable 2- azothiazol-based inhibitor (compound 2)
6HWU · Mitogen-activated protein kinase 14: “Crystal structure of P38ALPHA in complex with a photoswitchable 2- azothiazol-based inhibitor (compound 2)”. X-ray diffraction, 1 ligand (GE5), 6 pockets (best druggability 0.66). MolNFT v1…
- PDB
- 6HWU
- Type
- protein
- Length
- 333 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitogen-activated protein kinase 14
- EC
- 2.7.11.24
- UniProt
- Q16539
- Ligands
- GE5
- Pockets
- 6 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mitogen-activated protein kinase 14 (EC 2.7.11.24) | protein | 333 | 41% helix, 16% strand | Q16539 |
Ligands and binding sites
- GE5 · 3-(2,5-dimethoxyphenyl)-~{N}-[4-[4-(4-fluorophenyl)-2-[(~{E})-phenyldiazenyl]-1,3-thiazol-5-yl]pyridin-2-yl]propanamide · ligand · chains A
- BOG · octyl beta-D-glucopyranoside · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 200 | 0.66 | 0.84 | 30 | BOG |
| 2 | 239 | 0.62 | 0.81 | 32 | BOG |
| 3 | 130 | 0.59 | 0.84 | 26 | GE5 |
| 4 | 204 | 0.49 | 0.75 | 41 | empty |
| 5 | 82 | 0.37 | 0.76 | 16 | empty |
Compared structures
- 6HWU · Crystal structure of p38alpha in complex with a photoswitchable 2-Azothiazol-based… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16539
- Elsewhere: RCSB PDB 6HWU · PDBe 6HWU · UniProt Q16539
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