MolNFT v1 · #15168 · protein

Solution structure of the recombinant hemoglobin from the cyanobacterium synechocystis sp. pcc 6803 in its hemichrome state

1MWB · Cyanoglobin: “Solution structure of the recombinant hemoglobin from the cyanobacterium synechocystis sp. pcc 6803 in its…”. Solution nmr, 1 ligand (HEM), 2 pockets (best druggability 0.71). MolNFT v1 #15168 on GenesisL1: 3D…

PDB: 1MWB
Type: protein
Length: 123 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cyanoglobin
UniProt: P73925
Ligands: HEM
Pockets: 2 · best druggability 0.71

Structure

solution nmr · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cyanoglobin	protein	123	79% helix, 0% strand	P73925

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	414	0.71	0.82	34	HEM
2	129	0.50	0.79	22	empty

Compared structures

1MWB · Solution structure of the recombinant hemoglobin from the cyanobacterium Synechocystis… · the same entry in another collection · chain A against A, TM-score 1.00
P73925 · AlphaFold monomer V2.0 prediction for group 1 truncated hemoglobin glbn (P73925) · a predicted model of the same protein · chain A against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P73925
Elsewhere: RCSB PDB 1MWB · PDBe 1MWB · UniProt P73925

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