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Solution structure of the recombinant hemoglobin from the cyanobacterium synechocystis sp. pcc 6803 in its hemichrome state

Analyse Solution structure of the recombinant hemoglobin from the cyanobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1MWB
Type: protein
Length: 123 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cyanoglobin
UniProt: P73925
Ligands: HEM
Pockets: 2 · best druggability 0.71

Structure

solution nmr · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cyanoglobin	protein	123	79% helix, 0% strand	P73925

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	414	0.71	0.82	34	HEM
2	129	0.50	0.79	22	empty

Compared structures

1MWB · Solution structure of the recombinant hemoglobin from the cyanobacterium Synechocystis… · the same entry in another collection · chain A against A, TM-score 1.00
P73925 · AlphaFold monomer V2.0 prediction for group 1 truncated hemoglobin glbn (P73925) · a predicted model of the same protein · chain A against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P73925
Elsewhere: RCSB PDB 1MWB · PDBe 1MWB · UniProt P73925

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