MolNFT v1 · #151668 · protein
Dimeric archeal rubisco from hyperthermus butylicus
6HUN · Ribulose bisphosphate carboxylase: “Dimeric archeal rubisco from hyperthermus butylicus”. X-ray diffraction, 1 ligand (CA), 4 pockets (best druggability 0.43). MolNFT v1 #151668 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6HUN
- Type
- protein
- Length
- 428 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribulose bisphosphate carboxylase
- EC
- 4.1.1.39
- UniProt
- A2BK54
- Ligands
- CA
- Pockets
- 4 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribulose bisphosphate carboxylase (EC 4.1.1.39) | protein | 428 | 43% helix, 17% strand | A2BK54 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 165 | 0.43 | 0.74 | 24 | empty |
| 2 | 117 | 0.37 | 0.74 | 28 | CA |
| 3 | 94 | 0.37 | 0.75 | 15 | empty |
| 4 | 62 | 0.31 | 0.74 | 13 | empty |
Compared structures
- 6HUN · Dimeric Archeal Rubisco from Hyperthermus butylicus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2BK54
- Elsewhere: RCSB PDB 6HUN · PDBe 6HUN · UniProt A2BK54
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