MolNFT v1 · #15150 · protein
Decoding center & peptidyl transferase center from the X-ray structure of the thermus thermophilus 70S ribosome, aligned to the low resolution cryo-EM MAP of E.COLI 70S ribosome
1MVR · 30S ribosomal protein S12: “Decoding center & peptidyl transferase center from the X-ray structure of the thermus thermophilus 70S…”. Electron microscopy, 1 pocket (best druggability 0.35). MolNFT v1 #15150 on GenesisL1: 3D…
- PDB
- 1MVR
- Type
- protein
- Length
- 257 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30S ribosomal protein S12; 50S ribosomal protein L11
- UniProt
- Q5SHN3, P29395
- Pockets
- 1 · best druggability 0.35
Structure
electron microscopy · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| O | 30S ribosomal protein S12 | protein | 124 | 0% helix, 0% strand | Q5SHN3 |
| L | 50S ribosomal protein L11 | protein | 133 | 0% helix, 0% strand | P29395 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.35 | 0.73 | 25 | empty |
Compared structures
- 1MVR · Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus… · the same entry in another collection · chain O against O, TM-score 1.00
- 1OLN · Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA · a predicted model of the same protein · chain L against A, TM-score 1.00
- 1OLN · Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA · a predicted model of the same protein · chain L against A, TM-score 1.00
- P29395 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L11 (P29395) · a predicted model of the same protein · chain L against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SHN3
- Every structure of UniProt P29395
- Elsewhere: RCSB PDB 1MVR · PDBe 1MVR · UniProt Q5SHN3 · UniProt P29395
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