MolNFT v1 · #151222 · protein

RAB29 small GTPase bound to GDP

6HH2 · RAS-related protein rab-7L1: “RAB29 small GTPase bound to GDP”. X-ray diffraction, 2 ligands (GDP, MG). MolNFT v1 #151222 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6HH2
Type: protein
Length: 174 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RAS-related protein rab-7L1
UniProt: O14966
Ligands: GDP, MG

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RAS-related protein rab-7L1	protein	174	36% helix, 28% strand	O14966

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6HH2 · Rab29 small GTPase bound to GDP · the same entry in another collection · chain A against A, TM-score 1.00
O14966 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-7L1 (O14966) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O14966
Elsewhere: RCSB PDB 6HH2 · PDBe 6HH2 · UniProt O14966

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