MolNFT v1 · #151112 · protein
Crystal structure of 2-hydroxyisobutyryl-CoA ligase (hcl) in the postadenylation state in complex with 2-hib-AMP
6HDW · 2-hydroxyisobutyryl-CoA synthetase: “Crystal structure of 2-hydroxyisobutyryl-CoA ligase (hcl) in the postadenylation state in complex with…”. X-ray diffraction, 2 ligands (8LE, SO4), 3 pockets (best druggability 0.75). MolNFT v1…
- PDB
- 6HDW
- Type
- protein
- Length
- 475 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2-hydroxyisobutyryl-CoA synthetase
- EC
- 6.2.1.-
- UniProt
- I3VE75
- Ligands
- 8LE, SO4
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2-hydroxyisobutyryl-CoA synthetase (EC 6.2.1.-) | protein | 475 | 38% helix, 20% strand | I3VE75 |
Ligands and binding sites
- 8LE · [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 2-methyl-2-oxidanyl-propanoate · ligand · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 498 | 0.75 | 0.83 | 57 | 8LE, SO4 |
| 2 | 129 | 0.52 | 0.81 | 31 | empty |
| 3 | 89 | 0.39 | 0.77 | 18 | empty |
Compared structures
- 6HDW · Crystal structure of 2-Hydroxyisobutyryl-CoA Ligase (HCL) in the postadenylation state in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I3VE75
- Elsewhere: RCSB PDB 6HDW · PDBe 6HDW · UniProt I3VE75
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.